The Eukaryotic Promoter Database

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The Eukaryotic Promoter Database, EPD: new entry types and

(1 days ago) The Eukaryotic Promoter Database (EPD) is an annotated, non-redundant collection of eukaryotic Pol II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries.

https://pubmed.ncbi.nlm.nih.gov/11752326/

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The Eukaryotic Promoter Database (EPD): recent developments.

(2 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries.

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC148166/

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The eukaryotic promoter database in its 30th year: focus

(1 days ago) The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms. Nucleic Acids Res. 2017 Jan 4;45 (D1):D51-D55. doi: 10.1093/nar/gkw1069. Epub 2016 Nov 28.

https://pubmed.ncbi.nlm.nih.gov/27899657/

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EPD -- eukaryotic promoter database HSLS

(9 days ago) EPD is an annotated non-redundant collection of eukaryotic POL II promoters, experimentally defined by a transcription start site (TSS). Provides annotated and non-redundant collection of eukaryotic POL II promoters. Allows dynamic extraction of biologically meaningful promoter subsets for comparative sequence analysis.

https://www.hsls.pitt.edu/obrc/index.php?page=URL1096039135

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The eukaryotic promoter database (EPD). - Abstract

(2 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries.

https://europepmc.org/article/MED/10592254

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(PDF) The Eukaryotic Promoter Database (EPD)

(6 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to

https://www.researchgate.net/publication/12709603_The_Eukaryotic_Promoter_Database_EPD

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CSHL Human Promoter Database (HsPD)

(6 days ago) Cold Spring Harbor Laboratory Homo sapiens Promoter Database (HsPD) (Version 2.35, May 2005, NCBI build 35)

http://rulai.cshl.edu/cgi-bin/CSHLmpd2/hspd.pl

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The Eukaryotic Promoter Database EPD - Vital-IT

(Just Now) The Eukaryotic Promoter Database (EPD) is an anno-tated non-redundant collection of experimentally charac-terised eukaryotic POL II promoters. The underlying definition of a promoter is that of a transcription initiation site. All information presented in EPD results from an independent evaluation of primary experimental data

https://embnet.vital-it.ch/documentation/EPD98.pdf

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Eukaryotic Promoter Database - Wikipedia

(8 days ago) From Wikipedia, the free encyclopedia EPD (Eukaryotic Promoter Database) is a biological database and web resource of eukaryotic RNA polymerase II promoters with …

https://en.wikipedia.org/wiki/Eukaryotic_Promoter_Database

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The Eukaryotic Promoter Database EPD

(1 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters. The underlying definition of a promoter is that of a transcription initiation site. All information presented in EPD results from an independent evaluation of primary experimental data shown in the biological literature.

https://infoscience.epfl.ch/record/114862

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LSCF Bioinformatics - Sequence Analysis/Promoters

(2 days ago) TRANSFAC - a database on eukaryotic cis-acting regulatory DNA elements and trans-acting factors Transcription Start Site Prediction DBTSS - Database of Transcriptional Start Sites FirstEF - first-exon and promoter prediction program for human DNA

https://bip.weizmann.ac.il/toolbox/seq_analysis/promoters.html

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The Eukaryotic Promoter Database (EPD): recent developments

(1 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. The annotation part of an entry includes description of the initiation site mapping data, cross-references to

https://infoscience.epfl.ch/record/114873

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(PDF) The Eukaryotic Promoter Database EPD Thomas Junier

(Just Now) The Eukaryotic Promoter Database (EPD) is an anno- EPD has been designed as a resource for comparative sequence tated non-redundant collection of experimentally charac- analysis and so far has mainly served this purpose. For instance, terised eukaryotic POL II promoters.

https://www.academia.edu/15572199/The_Eukaryotic_Promoter_Database_EPD

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PPD: A Manually Curated Database for Experimentally

(7 days ago) In recent years, with the increase of sequencing data, the databases of eukaryotic and prokaryotic transcriptome have also increased. For eukaryotes, the well-known promoter databases is EPD. 9 In 2011, Dreos et al. 10 added promoters from NGS and high-throughput promoter mapping experiments to EPD and renamed it EPDnew. Now, EPDnew includes promoters from 15 eukaryotic

https://www.sciencedirect.com/science/article/pii/S0022283621000541

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The Eukaryotic Promoter Database (EPD): recent developments

(4 days ago) The Eukaryotic Promoter Database (EPD) is an anno-tated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in …

https://core.ac.uk/download/pdf/77209083.pdf

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(PDF) The Eukaryotic Promoter Database EPD Thomas Junier

(Just Now) The Eukaryotic Promoter Database (EPD) is a database of promoters in the former sense. Information about promoters in the latter sense can be found in other databases such as TRANSFAC (1), ooTFD (2), TRRD (3), PlantCARE (4) and PLACE (5).EPD was originally designed as a resource for comparative sequence analysis and, as such, has played an

https://www.academia.edu/15572171/The_Eukaryotic_Promoter_Database_EPD

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The Eukaryotic Promoter Database (EPD) - Europe PMC

(9 days ago) DATABASE DESCRIPTION. The term promoter has two different meanings in biology: (i) a gene region immediately upstream of a transcription initiation site, and (ii) a cis-acting genetic element controlling the rate of transcription initiation of a gene.The Eukaryotic Promoter Database (EPD) is a database of promoters in the former sense.

http://europepmc.org/articles/PMC102462

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(PDF) The Eukaryotic Promoter Database EPD

(6 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters. The underlying definition of a promoter is that of a

https://www.researchgate.net/publication/13830049_The_Eukaryotic_Promoter_Database_EPD

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Eukaryotic Promoter Database BiŌkeanós

(1 days ago) PMID:33334065 The eukaryotic promoter database in its 30th year: focus on non-vertebrate organisms. PMID:27899657 The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools. PMID:25378343 EPD and EPDnew, high-quality promoter resources in the next-generation sequencing era.

https://biokeanos.com/source/Eukaryotic%20Promoter%20Database

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Online Analysis Tools - Promoters

(8 days ago) Nucleic Acids Res. 38(Database Issue): D366-D370). PhagePromoter - is a tool for locating promoters in phage genomes, using machine learning methods. This is the first online tool for predicting promoters that uses phage promoter data and the first to identify both host and phage promoters with different motifs. It is part of Galaxy.

https://molbiol-tools.ca/Promoters.htm

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The Eukaryotic Promoter Database: preview & related

(2 days ago) EPD is an old database of experimentally characterized eukaryotic POL II promoters, which are conceptually defined as transcription initiation sites or regions. EPDnew is a collection of automatically compiled, organism-specific promoter lists complementing the old corpus of manually compiled promoter entries of EPD.

https://www.mendeley.com/catalogue/f9472f01-4660-3e8d-8637-1188682c4ae6/

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The Eukaryotic Promoter Database (EPD): recent

(8 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries.

https://paperity.org/p/34596870/the-eukaryotic-promoter-database-epd-recent-developments

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Altmetric – The Eukaryotic Promoter Database: expansion of

(1 days ago) The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools You are seeing a free-to-access but limited selection of the activity Altmetric has collected about this research output. Click here to find out more. View on publisher site Alert me about new mentions

https://www.altmetric.com/details/2864980

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Eukaryotic Promoter Database - Arabidopsis Community

(9 days ago) Eukaryotic Promoter Database. Description. Database of experimentally verified promoters from a variety model organisms including Arabidopsis. Genome annotation version is TAIR 10 not Araport 11. Maintained by. Swiss Institute of Bioinformatcs. promoter. gene_expression.

https://conf.arabidopsis.org/display/COM/Eukaryotic+Promoter+Database

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The Eukaryotic Promoter Database - Mybestcouponcodes.com

(7 days ago) (Just Now) The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries. Category: coupon codes Show All Coupons

https://www.mybestcouponcodes.com/the-eukaryotic-promoter-database/

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CiteSeerX — The Eukaryotic Promoter Database EPD

(3 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters. The underlying definition of a promoter is that of a transcription initiation site. All information presented in EPD results from an independent evaluation of primary experimental data shown in the

http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.96.1216

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CiteSeerX — The Eukaryotic Promoter Database (EPD

(4 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of experimentally characterised eukaryotic POL II promoters. The underlying definition of a promoter is that of a transcription initiation site. All information presented in EPD results from an independent evaluation of primary experimental data shown in the

http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.329.2595

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Eukaryotic Promoter Database 30th Anniversary Symposium

(1 days ago) Eukaryotic Promoter Database 30th Anniversary Symposium Promoter Research: Past, Present and Future 29-30 September 2016 Conference Centre Starling Hotel-EPFL, Lausanne !"# Short Talks Abstracts 1. Tugce Bilgin Sonay, UZH: Tandem repeats in promoters

https://www.sib.swiss/events/EPD_symposium2016/img/BookletAbstracts.pdf

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Eukaryotic and prokaryotic promoter databases as valuable

(7 days ago) One of the oldest promoter databases is the Eukaryotic Promoter Database (EPD) (Cavin Perier et al., 1998). It is a collection of 4806 RNA polymerase II promoters with transcription start sites (TSSs). The data presented in the EPD are based on TSS mapping experiments published in journal articles or on expressed sequence tags (ESTs) of full

https://www.sciencedirect.com/science/article/pii/S0378111917309265

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Eukaryotic Promoter Database Epd - Best Coupon Codes

(7 days ago) The Eukaryotic Promoter Database EPD: the impact of in . CODES (1 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, experimentally defined by a transcription start site (TSS). There may be multiple promoter entries for a single gene. The underlying experimental evidence comes from journal articles and, starting from

https://www.mybestcouponcodes.com/eukaryotic-promoter-database-epd/

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Eukaryotic Promoter Database and similar biodatabases

(4 days ago) Eukaryotic Promoter Database is similar to these biodatabases: RNA polymerase II holoenzyme, Transcription factor II A, Transcription factor II D and more.

https://frankensaurus.com/Eukaryotic_Promoter_Database

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The Eukaryotic Promoter Database EPD: the impact of in

(7 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, experimentally defined by a tran-scription start site (TSS). There may be multiple pro-moter entries for a single gene. The underlying experimental evidence comes from journal articles and, starting from release 73, from 5¢ ESTs of

https://serval.unil.ch/resource/serval:BIB_31432.P001/REF

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Computational Cancer Genomics

(Just Now) The Eukaryotic Promoter Database is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. It provides information about eukaryotic promoters available in the EMBL Data Library and is intended to assist researchers in the investigation of eukaryotic

https://ccg.epfl.ch/

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The Eukaryotic Promoter Database: expansion of EPDnew and

(4 days ago) EPD is an old database of experimentally character-ized eukaryotic POL II promoters, which are concep-tually defined as transcription initiation sites or re-gions. EPDnew is a collection of automatically com-piled, organism-specific promoter lists complement-ing the old corpus of manually compiled promoter entries of EPD.

https://core.ac.uk/download/pdf/85210178.pdf

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Promoter Sequence Database - Aug 2021 Verified

(Just Now) The Eukaryotic Promoter Database (EPD) is an annotated, non-redundant collection of eukaryotic Pol II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries.

https://couponsdoom.com/promoter-sequence-database

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Eukaryotic Promoter Database - How is Eukaryotic Promoter

(7 days ago) Category filter: Show All (71)Most Common (0)Technology (12)Government & Military (23)Science & Medicine (26)Business (13)Organizations (11)Slang / Jargon (2) Acronym Definition EPD Environmental Protection Division EPD Eukaryotic Promoter Database EPD Environmental Protection Department (Hong Kong) EPD Evangelischer Pressedienst EPD Electronic Paper

https://acronyms.thefreedictionary.com/Eukaryotic+Promoter+Database

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Eukaryotic promoter, the eukaryotic promoter database is

(4 days ago) The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to positions in nucleotide sequence entries The eukaryotic promoter database (EPD) is based on such

https://begraven-gemacht.com/boundless-biology/chapter/eukaryotic-transcription/1oqc2292m-hapw

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JASPAR -- database for eukaryotic transcription factor

(9 days ago) JASPAR is a popular open-access database for matrix models describing DNA-binding preferences for transcription factors and other DNA patterns. With its third major release, JASPAR has been expanded and equipped with additional functions aimed at both casual and power users. The heart of the JASPAR database-the JASPAR CORE sub-database-has

https://www.hsls.pitt.edu/obrc/index.php?page=URL1096041441

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Promoter analysis with MatInspector - YouTube

(3 days ago) Here's a short intoduction to MatInspector, Genomatix' promoter analysis tool. We outline how to select a promoter for transcription factor analysis and how

https://www.youtube.com/watch?v=qruoDrHc2nU

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EPD - Eukaryotic Promoter Database AcronymFinder

(9 days ago) EPD stands for Eukaryotic Promoter Database. Suggest new definition. This definition appears very frequently and is found in the following Acronym Finder categories: Science, medicine, engineering, etc. Organizations, NGOs, schools, universities, etc. See other definitions of EPD.

https://www.acronymfinder.com/Eukaryotic-Promoter-Database-(EPD).html

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Common promoters for eukaryotes and prokaryotes – SignaGen

(5 days ago) Hybrid promoter of lac and trp. Regulated like the lac promoter. Contains -35 region from trpB and -10 region from lac. Very tight regulation. Good for modulating gene expression through varied inducer concentrations. Generally better expression than lac alone. pL. High levels of gene expression.

https://signagen.com/blog/2015/10/16/common-promoters-for-eukaryotes-and-prokaryotes/

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DoOP: Databases of Orthologous Promoters, collections of

(4 days ago) The database can be used to find and retrieve promoter sequences of a given gene from various species and it is also suitable to see the most trivial conserved sequence blocks in the orthologous upstream regions. Users can search DoOP with either sequence or text (annotation) to find promoter clusters of various genes.

https://www.ncbi.nlm.nih.gov/pubmed/15608291

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Promoter Sequence Database Verified GetCouponsWorld.com

(4 days ago) The Eukaryotic Promoter Database (EPD): recent developments. COUPON (11 days ago) Jan 01, 2001 · The Eukaryotic Promoter Database (EPD) is an annotated non-redundant collection of eukaryotic POL II promoters, for which the transcription start site has been determined experimentally. Access to promoter sequences is provided by pointers to

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